I will say this whole service center experience thing is very subjective and based on person to person variation. I am a proud owner of Skoda Fabia which is almost 6 years old and has run 1,35,000 kms and counting. It still runs like a dream.
It has always been serviced at Skoda A.S.S.
The only major jobs till date are
1. Front suspension overhaul between 50k - 60k kms
2. Front Discs replacement (1,05,000 kms)
3. Timing overhaul with water pump replacement at 1,20,000 km service (as per Skoda service manual)
4. Battery replacement twice. Both times it was done from local battery shop.
Coming to my service center experiences. I have experienced service centers in Pune, Indore, Faridabad, Delhi due to switching jobs. Yes, it has not been a sit back and relax experience with the service centers. Some arm twisting, some cajoling, some camaraderie has seen me through most of my services. Yes, you need to know what the service center team is talking about. But then that is the same for every car you own.
I don't think there is no option being of being a layman with the newer breed of cars - We have examples here in our own forum -
1. Maruti -
http://www.team-bhp.com/forum/techni...engine-28.html
2. Honda -
http://www.team-bhp.com/forum/indian...nymore-26.html
3. Hyundai -
http://www.team-bhp.com/forum/techni...ai-dealer.html
4. Toyota -
https://www.team-bhp.com/forum/techn...va-crysta.html (Niggles & issues with the Toyota Innova Crysta)
There are many more ranging from Marutis to Mercs. Sometimes it is just hard luck.
With my recent experiences, I have been heard at service center, I have been shown what is wrong and then approval has been given to fix. Skoda has been making it easier by telling you what needs to be done at each service with associated labour costs. For new cars, they are providing 4 years or 60,000 kms maintenance package and default 4 year warranty. I agree that the parts cost more than other brands but only major ones do like a Clutch assembly, flywheeel or AC related parts.
Coming to the points raised by iTnerd and Behemoth -
iTnerd - You could have easily asked then to show the leak and why they think it should be changed. Also, second opinion like you got does not harm. We do it in case of doctors as well.
Behemoth - It is surprising that the clutch on your car packed up in 46k kms. I think a second opinion at an outside garage wouldn't have mattered.
In my opinion, the reason for service center quoting a higher prices for a fix as compared to FNG is that VW or any other car company does not let them change sub parts or fabricate "jugaad" fixes. Plus the technicians (max 12th pass with some ITI diploma) are trained to perform steps A..B..C.. and there is no incentive for having a go getter attitude and finding "Z". Also, running a big dealership comes with cost and most them are trying to make a quick buck to meet targets.
Finally the arrogance part, arrogance runs in the blood of us north Indians. "Tu jaanta nahi mein kaun hoon" is the default attitude of everyone. Customer service/ basic courtesy does not mean a thing here. This is not only evident at car service centers but at other showrooms, shops, service centers etc. I am out of experience when I compare it to other parts of the country.
Rest this is my opinion and you are entitled to yours.
Please note: I am in no way connected to Skoda or VW. I am just one happy customer. And yes with background of a happy ownership experience, I recently bought a Skoda Rapid. So Fingers Crossed.